Madeleine Ernst

Madeleine Ernst

Contact

Madeleine Ernst , Medfødte Sygdomme / Center for Neonatal Screening
T. +45 32688498 @. maet@ssi.dk

Research area

I’m a research scientist at the Danish Center for Newborn Screening, Department of Congenital Disorders, where my research is focused around developing computational approaches and data analysis pipelines for metabolomics studies. Most of our studies are on dried blood spots retrieved from the Danish National Biobank and the routine screening of newborns in Denmark. Using metabolomics approaches we aim at discovering novel biomarkers for the screening of inborn diseases in neonates, as well as study impacts of post-natal exposure on future health outcomes and wellbeing.

Awards

Google Scholar link

Responsibilities

My responsibilities range from developing novel computational metabolomics approaches for the analysis of dried blood spots, to guiding LC-MS/MS metabolomics method development and data quality assessment, to high throughput metabolite annotation and biological interpretation.

Publications

  • Madeleine Ernst, Kyo Bin Kang, Andrés Mauricio Caraballo-Rodríguez, Louis-Félix Nothias, Joe Wandy, Christopher Chen, Ming Wang, Simon Rogers, Marnix H. Medema, Pieter C. Dorrestein, Justin J.J. van der Hooft. MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools. Metabolites 9/2019, 144.
  • Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al-Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J. Brislawn, C. Titus Brown, Benjamin J. Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily K. Cope, Ricardo Da Silva, Christian Diener, Pieter C. Dorrestein, Gavin M. Douglas, Daniel M. Durall, Claire Duvallet, Christian F. Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M. Gauglitz, Sean M. Gibbons, Deanna L. Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin A. Huttley, Stefan Janssen, Alan K. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, Kyo Bin Kang, Christopher R. Keefe, Paul Keim, Scott T. Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G. I. Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D. Martin, Daniel McDonald, Lauren J. McIver, Alexey V. Melnik, Jessica L. Metcalf, Sydney C. Morgan, Jamie T. Morton, Ahmad Turan Naimey, Jose A. Navas-Molina, Louis Felix Nothias, Stephanie B. Orchanian, Talima Pearson, Samuel L. Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam Rivers, Michael S. Robeson II, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R. Spear, Austin D. Swafford, Luke R. Thompson, Pedro J. Torres, Pauline Trinh, Anupriya Tripathi, Peter J. Turnbaugh, Sabah Ul-Hasan, Justin J. J. van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C. Weber, Charles H. D. Williamson, Amy D. Willis, Zhenjiang Zech Xu, Jesse R. Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight & J. Gregory Caporaso. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology 37/2019, 852–857.
  • Alan K. Jarmusch, Emmanuel O. Elijah, Fernando Vargas, Amina Bouslimani, Ricardo R. da Silva, Madeleine Ernst, Mingxun Wang, Krizia K. del Rosario, Pieter C. Dorrestein, Shirley M. Tsunoda. Initial Development Towards Non-Invasive Drug Monitoring via Untargeted Mass Spectrometric Analysis of Human Skin. Analytical chemistry 91/2019, 8062-8069.
  • Xuanji Li, Asker Daniel Brejnrod, Madeleine Ernst, Martin Rykær, Jakob Herschend, Nanna Mee Coops Olsen, Pieter C. Dorrestein, Christopher Rensing, Søren Johannes Sørensen. Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites. Environment International 126/2019, 454-467.
  • Simon Rogers, Cher Wei Ong, Joe Wandy, Madeleine Ernst, Lars Ridder and Justin J. J. van der Hooft. Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra. Faraday discussions 218/2019, 284-302.
  • Ricardo R. da Silva, Fernando Vargas, Madeleine Ernst, Ngoc Hung Nguyen, Sanjana Bolleddu, Krizia Karen del Rosario, Shirley M. Tsunoda, Pieter C. Dorrestein, Alan K. Jarmusch. Computational Removal of Undesired Mass Spectral Features Possessing Repeat Units via a Kendrick Mass Filter. Journal of The American Society for Mass Spectrometry 30/2019, 268-277.
  • Kyo Bin Kang*, Madeleine Ernst*, Justin J. J. van der Hooft*, Ricardo R. da Silva, Junha Park, Marnix H. Medema, Sang Hyun Sung, Pieter C. Dorrestein. Comprehensive mass spectrometry‐guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae. The Plant Journal 98/2019, 1134-1144.
  • Madeleine Ernst, Louis-Félix Nothias, Justin J. J. van der Hooft, Ricardo R. Silva, C. Haris Saslis-Lagoudakis, Olwen M. Grace, Karen Martinez-Swatson, Gustavo Hassemer, Luís A. Funez, Henrik T. Simonsen, Marnix H. Medema, Dan Staerk, Niclas Nilsson, Paola Lovato, Pieter C. Dorrestein and Nina Rønsted. Assessing specialized metabolite diversity in the cosmopolitan plant genus Euphorbia L. Frontiers in Plant Science 10/2019, 846.